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Obsidian vs Notion in 2025: Which Is Best for Your Markdown Workflow?

· Save Team
obsidian notion comparison note-taking pkm

The two giants of personal knowledge management—Obsidian and Notion—serve different needs. If you’re trying to decide where to store your notes, research, and web content, this comparison will help you choose.

The Fundamental Difference

Obsidian stores everything as local Markdown files. You own your data completely.

Notion stores everything in the cloud using a proprietary block format. You get collaboration and databases.

This single difference drives almost every other distinction.

Markdown: Native vs. Supported

Obsidian

Obsidian is Markdown. Every note is a .md file on your computer:

  • Edit with any text editor
  • Sync via your preferred method (Git, Dropbox, iCloud)
  • Transfer to other apps instantly
  • Future-proof—Markdown has existed since 2004

When you save web content as Markdown, it drops directly into your vault and works immediately.

Notion

Notion supports Markdown but uses a proprietary block format internally:

  • Import Markdown, but it converts to blocks
  • Export Markdown, but with Notion-specific formatting
  • No direct file access
  • Locked into Notion’s ecosystem

Importing Markdown works, but you lose some fidelity. Exporting creates files with UUIDs and non-standard syntax.

Importing Web Content

To Obsidian

  1. Save webpage as Markdown with Save
  2. Move file to your vault folder
  3. Done — it’s immediately available

Or use Obsidian’s built-in “Import” feature to drag and drop Markdown files.

To Notion

  1. Save webpage as Markdown with Save
  2. Open Notion
  3. Import → Markdown from the sidebar
  4. Adjust formatting if needed

Notion handles most Markdown well, but complex formatting may need tweaking.

Feature Comparison

FeatureObsidianNotion
Data StorageLocal filesCloud
Offline AccessFullLimited
CollaborationVia sync servicesNative
DatabasesVia pluginsNative
Linking[[wikilinks]]Native links
Graph ViewBuilt-inNot available
PriceFree (sync $8/mo)Free (teams $10/mo)
Markdown NativeYesImport/Export
Plugins1000+ communityLimited

Who Should Use Obsidian

Choose Obsidian if you:

  • Value data ownership — your files, your control
  • Work offline frequently — planes, remote areas, focus time
  • Are a developer — comfortable with files and folders
  • Want customization — plugins for everything
  • Think in connections — graph view reveals patterns
  • Plan for the long term — files work forever

Obsidian Strengths

  • Speed — instant search and loading
  • Privacy — nothing leaves your device
  • Flexibility — make it work your way
  • Portability — switch tools anytime

Who Should Use Notion

Choose Notion if you:

  • Collaborate with teams — real-time editing is essential
  • Need databases — project management, CRMs, tracking
  • Prefer visual organization — boards, galleries, calendars
  • Want turnkey solution — works out of the box
  • Manage projects — tasks, timelines, dependencies

Notion Strengths

  • Collaboration — best-in-class team features
  • Databases — powerful relational structures
  • Templates — extensive gallery of starting points
  • AI features — summarization, writing assistance built-in

The Hybrid Approach

Many power users use both:

  • Obsidian for personal knowledge, research, and writing
  • Notion for team projects, shared databases, and collaboration

Web content saved as Markdown can go to either system depending on the use case.

Importing Web Content Workflows

Research Workflow (Obsidian)

  1. Find valuable article online
  2. Save as Markdown with Save extension
  3. Move to ~/vault/sources/ folder
  4. Open in Obsidian
  5. Add [[wikilinks]] to connect ideas
  6. Write your own notes linking to the source

Project Workflow (Notion)

  1. Find relevant documentation or article
  2. Save as Markdown with Save extension
  3. Import to Notion project page
  4. Add to project database
  5. Share with team members
  6. Reference in project discussions

Migration Between Tools

Obsidian to Notion

Relatively straightforward:

  1. Select Markdown files to migrate
  2. Import to Notion
  3. Reorganize into databases/pages
  4. Fix any formatting issues

You lose: wikilinks (need to recreate), graph connections, plugins

Notion to Obsidian

More complex:

  1. Export from Notion as Markdown
  2. Clean up Notion-specific formatting
  3. Move files to Obsidian vault
  4. Recreate links as wikilinks
  5. Rebuild organization

You lose: databases (become flat files), real-time collaboration, embedded views

Performance Comparison

Obsidian

  • Startup: Instant
  • Search: Instant (indexed locally)
  • Large vaults: Handles 10,000+ notes
  • Resource usage: Low

Notion

  • Startup: 2-5 seconds
  • Search: Fast but requires network
  • Large workspaces: Can slow down
  • Resource usage: Higher (Electron app)

Privacy and Security

Obsidian

  • Files stay on your device
  • End-to-end encryption available with Obsidian Sync
  • Audit exactly what you share
  • No company has access to your notes

Notion

  • All data stored on Notion servers
  • SOC 2 Type 2 certified
  • Enterprise security features available
  • Company can technically access your data

My Recommendation

For individual knowledge workers: Start with Obsidian. The Markdown-native approach means your saved web content integrates perfectly, and you’ll never worry about data portability.

For teams and project management: Use Notion for shared work, but consider Obsidian for personal notes that feed into team projects.

For maximum flexibility: Use both. Save web content as Markdown (it works with either), then import where it makes sense for each use case.

Get Started

Whatever tool you choose, the first step is capturing great content from the web.

Install Save from the Chrome Web Store — save any webpage as clean Markdown for Obsidian, Notion, or any other tool.


Have questions? Reach out at [email protected]